This collection contains diaries, weather records, and commonplace books of Thomas Thistlewood for the years 1748-1786. His diaries (37 volumes) cover two years in England (in London and in Lincolnshire) and the remaining time in Jamaica (1750-1786). This is a rich source for agricultural, daily routines, slave life, folklore, natural history, medical diagnosis and remedies, the intellectural world of an Anglo-Jamaican, his sex life, and the climatic history of Jamaica. There are also miscellaneous volumes, such as a list of slaves, 1758-1766. Included in the collection is the journal of his nephew, John Thistlewood, 1763-1765, describing his voyage to Jamaica and life on his uncle's plantation.

The Calendar of the Papers of Benjamin Franklin prepared by Isaac Minis Hays for the bicentennial of Franklin's birth in 1906 provides access to the largest portion of the Franklin Papers at the APS. The items were originally bound into volumes in roughly chronological order, with letters to Franklin preceding those from Franklin and at the end of the collection, Franklin's letters owned by the University of Pennsylvania. Each manuscript is still identified by Hays' reference numbers, which include a roman numeral refering to the original volume followed by an arabic number to identify the folio. The electronic version of the finding aid replicates Hays' calendar, including the introductory material and item-level descriptions. It has been updated to reflect corrections in the metadata, corrections of personal names, dates, and description.

One of the oldest houses in Philadelphia, Wyck is now a non-profit museum listed on the National Register of Historic Places. Nine generations of the Jansen-Wistar-Haines family owned the Wyck property from 1690 until 1973. The last family owner deeded 2.5 acres of land, the house and its contents, several outbuildings, a landscaped garden, and a small endowment to the Wyck Charitable Trust. The Wyck Charitable Trust and the Wyck Association now administer the preservation of the property and its educational services to the public. This collection contains diaries, letters, accounts, bills and receipts, deeds, and photographs. The collection as a whole is deepest for the period 1770-1970. Items of particular note include accounts of household expenses at Wyck from ca. 1790-1970; papers pertaining to the Academy of Natural Sciences of Philadelphia, Quaker schools, and social reform groups; agricultural and horticultural practices; and correspondence to and from cultural leaders of 18th and 19th century Philadelphia. The papers of the John S. Haines family (Ms. Coll. 52A) form part of the Wyck Papers. The papers cover the years 1845 to 1949 and are arranged into eight series.

Through his craniometic studies of human races, the Philadelphia physician Samuel George Morton (1799-1851) exerted a profound influence on the development of physical anthropology in antebellum America, and made substantial contributions to mineralogy, paleontology, and natural history. Relating primarily to Morton's scientific interests, the Morton Papers include insights into Morton's perspectives on education, medical practice, geology and mineralogy, craniology, paleontology, the Wilkes Exploring Expedition (also known as the United States Exploring Expedition 1838-1842), and his two major monographs, the Crania Americana and Crania Aegyptiaca. Several of the letters were written by Morton in his capacity as corresponding secretary of the Academy of Natural Sciences of Philadelphia. Also included in this collection are Morton's "Some Remarks on the Infrequency of Mixed Offspring Between the European and Australian Races" (1850), Joseph Barclay Pentland's notes on the aborigines of Peru (ca. 1840?), and newspaper clippings on Morton's death; a diary of Morton's trip to the West Indies, 1834, a set of craniological sketches for use in Crania Americana, and a microfilm of letters in private hands, written to Morton, 1838-1844